LMP1210H: Basic Principles of Machine Learning in Biomedical Research

Who can attend

You must be registered in a graduate program to attend this course.

This course is open to all graduate students at the University of Toronto, provided you have pre-approval from your department and the course coordinators. 

Course description

This course is intended for graduate students in Health Sciences to learn the basic principles of machine learning in biomedical research and to build and strengthen their computational skills of medical research.

The course aims to equip you with the fundamental knowledge of machine learning (ML).

During the course, you will acquire basic computational skills and hands-on experience to deploy ML algorithms using python. Students are expected to be familiar in python prior to taking this course. 

You will learn the current practices and applications of ML in medicine and understand what ML can and cannot do for medicine. The goal of this course to establish an essential foundation for graduate students to take the first steps in computational research in medicine.

Communication

Students are encouraged to sign up to Piazza to join course discussions. If your question is about the course material and doesn’t give away any hints for the homework, please post to Piazza so that the entire class can benefit from the answer.

Please do not send the instructor or the TAs email about the class directly to their personal accounts. Use private messages on Piazza instead.

Course coordinators

Bo Wang and Rahul Krishnan

lmp.grad@utoronto.ca for administrative queries.

Teaching Assistant (TA)

Ahmedreza Attarpour

Timings and location

Thursdays, 10:30 am - 12:30 pm

Location: BA1210 (Bahen Centre Information Tech)

Evaluation methods

  • Three assignments (45%)
    • A1 – 15%, Due Feb 1
    • A2 – 15%, Due Feb 15
    • A3 – 15%, Due Mar 7
  • Term project on machine learning algorithms in medicine (55%) - Proposal due Feb 20 and final report due April 8

Schedule

Date

Topic

January 9, 2025

Intro to ML in medicine, KNN

January 16, 2025

Tree based classifiers

A1 released

January 23, 2025

Linear methods for classification and regression

January 30, 2025

Neural networks

A1 due, A2 released

February 6, 2025

Ensemble models

February 13, 2025

Unsupervised learning

A2 due, A3 released

February 20, 2025

Reading week (no class)

February 27, 2025

Unsupervised learning

March 6, 2025

Guest lecture

A3 due

March 13, 2025

Medical imaging

March 20, 2025

Office hours for project

March 27, 2025

Team presentation

April 3, 2025

Team presentation

Project report due